Package: cellxgene.census 1.16.1
Chan Zuckerberg Initiative Foundation
cellxgene.census: CZ CELLxGENE Discover Cell Census
API to facilitate the use of the CZ CELLxGENE Discover Census. For more information about the API and the project visit https://github.com/chanzuckerberg/cellxgene-census/
Authors:
cellxgene.census_1.16.1.tar.gz
cellxgene.census_1.16.1.tgz(r-4.4-any)cellxgene.census_1.16.1.tgz(r-4.3-any)
cellxgene.census_1.16.1.tar.gz(r-4.5-noble)cellxgene.census_1.16.1.tar.gz(r-4.4-noble)
cellxgene.census_1.16.1.tgz(r-4.4-emscripten)cellxgene.census_1.16.1.tgz(r-4.3-emscripten)
cellxgene.census.pdf |cellxgene.census.html✨
cellxgene.census/json (API)
# Install 'cellxgene.census' in R: |
install.packages('cellxgene.census', repos = c('https://tldbsm.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/chanzuckerberg/cellxgene-census/issues
Last updated 18 days agofrom:aec41967db (on v1.16.2). Checks:OK: 1 ERROR: 3. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 07 2024 |
R-4.5-linux | ERROR | Oct 07 2024 |
R-4.4-mac | ERROR | Oct 07 2024 |
R-4.3-mac | ERROR | Oct 07 2024 |
Exports:download_source_h5adget_census_mirrorget_census_mirror_directoryget_census_version_descriptionget_census_version_directoryget_presence_matrixget_seuratget_single_cell_experimentget_source_h5ad_urinew_SOMATileDBContext_for_censusopen_soma
Dependencies:arrowaskpassassertthataws.s3aws.signaturebase64encbitbit64clicpp11curldata.tabledigestdplyrfansifsgenericsgluehttrjsonlitelatticelifecyclemagrittrMatrixmimenanoarrownanotimeopensslpillarpkgconfigpurrrR6RcppRcppCCTZRcppDateRcppInt64RcppSpdlogrlangspdlsystibbletidyselecttiledbtiledbsomatriebeardurltoolsutf8vctrswithrxml2zoo
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Download source H5AD to local file name. | download_source_h5ad |
Get locator information about a Census mirror | get_census_mirror |
Get the directory of Census mirrors currently available | get_census_mirror_directory |
Get release description for a Census version | get_census_version_description |
Get the directory of Census releases currently available | get_census_version_directory |
Read the feature dataset presence matrix. | get_presence_matrix |
Export Census slices to 'Seurat' | get_seurat |
Export Census slices to 'SingleCellExperiment' | get_single_cell_experiment |
Locate source h5ad file for a dataset. | get_source_h5ad_uri |
Create 'SOMATileDBContext' for Census | new_SOMATileDBContext_for_census |
Open the Census | open_soma |